Multiscale Coupling of One-dimensional Vascular Models and Elastic Tissues

We present a computational multiscale model for the efficient simulation of vascularized tissues, composed of an elastic three-dimensional matrix and a vascular network. The effect of blood vessel pressure on the elastic tissue is surrogated via hyper-singular forcing terms in the elasticity equations, which depend on the fluid pressure. In turn, the blood flow in vessels is treated as a one-dimensional network. Intravascular pressure and velocity are simulated using a high-order finite volume scheme, while the elasticity equations for the tissue are solved using a finite element method. This work addresses the feasibility and the potential of the proposed coupled multiscale model. In particular, we assess whether the multiscale model is able to reproduce the tissue response at the effective scale (of the order of millimeters) while modeling the vasculature at the microscale. We validate the multiscale method against a full scale (three-dimensional) model, where the fluid/tissue interface is fully discretized and treated as a Neumann boundary for the elasticity equation. Next, we present simulation results obtained with the proposed approach in a realistic scenario, demonstrating that the method can robustly and efficiently handle the one-way coupling between complex fluid microstructures and the elastic matrix

Quasi-optimal mesh sequence construction through smoothed adaptive finite element methods

We propose a new algorithm for adaptive finite element methods (AFEMs) based on smoothing iterations (S-AFEM), for linear, second-order, elliptic partial differential equations (PDEs). The algorithm is inspired by the ascending phase of the V-cycle multigrid method: we replace accurate algebraic solutions in intermediate cycles of the classical AFEM with the application of a prolongation step, followed by the application of a smoother. Even though these intermediate solutions are far from the exact algebraic solutions, their a posteriori error estimation produces a refinement pattern that is substantially equivalent to the one that would be generated by classical AFEM, at a considerable fraction of the computational cost. We provide a qualitative analysis of how the error propagates throughout the algorithm, and we present a series of numerical experiments that highlight the efficiency and the computational speedup of S-AFEM

Quasi-optimal mesh sequence construction through Smoothed Adaptive Finite Element Methods

We propose a new algorithm for Adaptive Finite Element Methods (AFEMs) based on smoothing iterations (S-AFEM), for linear, second-order, elliptic partial differential equations (PDEs). The algorithm is inspired by the ascending phase of the V-cycle multigrid method: we replace accurate algebraic solutions in intermediate cycles of the classical AFEM with the application of a prolongation step, followed by a fixed number of few smoothing steps. Even though these intermediate solutions are far from the exact algebraic solutions, their a-posteriori error estimation produces a refinement pattern that is substantially equivalent to the one that would be generated by classical AFEM, at a considerable fraction of the computational cost. We quantify rigorously how the error propagates throughout the algorithm, and we provide a connection with classical a posteriori error analysis. A series of numerical experiments highlights the efficiency and the computational speedup of S-AFEM

Reverse engineering the euglenoid movement

Euglenids exhibit an unconventional motility strategy amongst unicellular eukaryotes, consisting of large-amplitude highly concerted deformations of the entire body (euglenoid movement or metaboly). A plastic cell envelope called pellicle mediates these deformations. Unlike ciliary or flagellar motility, the biophysics of this mode is not well understood, including its efficiency and molecular machinery. We quantitatively examine video recordings of four euglenids executing such motions with statistical learning methods. This analysis reveals strokes of high uniformity in shape and pace. We then interpret the observations in the light of a theory for the pellicle kinematics, providing a precise understanding of the link between local actuation by pellicle shear and shape control. We systematically understand common observations, such as the helical conformations of the pellicle, and identify previously unnoticed features of metaboly. While two of our euglenids execute their stroke at constant body volume, the other two exhibit deviations of about 20% from their average volume, challenging current models of low Reynolds number locomotion. We find that the active pellicle shear deformations causing shape changes can reach 340%, and estimate the velocity of the molecular motors. Moreover, we find that metaboly accomplishes locomotion at hydrodynamic efficiencies comparable to those of ciliates and flagellates. Our results suggest new quantitative experiments, provide insight into the evolutionary history of euglenids, and suggest that the pellicle may serve as a model for engineered active surfaces with applications in microfluidics

The deal.II Library, Version 8.3

deal.II version 8.3 was released August 1, 2015. This paper provides an overview of the new features of this release and serves as a citable reference for the deal.II software library version 8.3. deal.II is an object-oriented finite element library used around the world in the development of finite element solvers. It is available for free under the GNU Lesser General Public License (LGPL) from the deal.II homepage at http://www.dealii.org/

Space use of wild boar (Sus Scrofa) in Budapest: are they resident or transient city dwellers?

In our study, we examined the movement of two wild boars marked with GPS/GSM transmitters in city of Budapest. We hypothesised that: the wild boars do not leave the urban area (H1); the wild boars prefer places that are less disturbed by people, and which are rich in potential hiding places (H2); and their home ranges would be smaller than that of wild boars living in non-urban environment (H3). Based on our results, we accepted our first hypothesis, as the wild boars had not left the area of Budapest. However, we partly rejected our second hypothesis: the wild boars preferred urban areas that were forested and richly covered with vegetation; however, human presence therefore disturbance was also high in those areas. The home range sizes of both marked wild boar sows were remarkably smaller than those of the wild boars living in natural environment (H3). City habitat modification, e.g. clearing undergrowth vegetation, could result that wild boars cannot find any hiding places. The significant part of food sources will disappear with the elimination of these places. By eliminating the two main factors together could prevent wild boars finding their living conditions within the city

A European Concern? Genetic Structure and Expansion of Golden Jackals (Canis aureus) in Europe and the Caucasus

In the first continent-wide study of the golden jackal (Canis aureus), we characterised its population genetic structure and attempted to identify the origin of European populations. This provided a unique insight into genetic characteristics of a native carnivore population with rapid large-scale expansion. We analysed 15 microsatellite markers and a 406 basepair fragment of the mitochondrial control region. Bayesian-based and principal components methods were applied to evaluate whether the geographical grouping of samples corresponded with genetic groups. Our analysis revealed low levels of genetic diversity, reflecting the unique history of the golden jackal among Europe’s native carnivores. The results suggest ongoing gene flow between south-eastern Europe and the Caucasus, with both contributing to the Baltic population, which appeared only recently. The population from the Peloponnese Peninsula in southern Greece forms a common genetic cluster with samples from south-eastern Europe (ΔK approach in STRUCTURE, Principal Components Analysis [PCA]), although the results based on BAPS and the estimated likelihood in STRUCTURE indicate that Peloponnesian jackals may represent a distinct population. Moreover, analyses of population structure also suggest either genetic distinctiveness of the island population from Samos near the coast of Asia Minor (BAPS, most STRUCTURE, PCA), or possibly its connection with the Caucasus population (one analysis in STRUCTURE). We speculate from our results that ancient Mediterranean jackal populations have persisted to the present day, and have merged with jackals colonising from Asia. These data also suggest that new populations of the golden jackal may be founded by long-distance dispersal, and thus should not be treated as an invasive alien species, i.e. an organism that is “non-native to an ecosystem, and which may cause economic or environmental harm or adversely affect human health”. These insights into the genetic structure and ancestry of Baltic jackals have important implications for management and conservation of jackals in Europe. The golden jackal is listed as an Annex V species in the EU Habitats Directive and as such, considering also the results presented here, should be legally protected in all EU member states

Studia Litteraria

Imre Mihály: A Querela Hungariae toposz kialakulása a 16. század költészetében 9-48. Heltai János: Ki az Itinerarium Catholicum szerzője? 49-60. Bitskey István: Pázmány, Szánló, Bellarmino 61-67. Lőkös István: Zrínyi és Gundulic 68-78. Győri L. János: Az exemplumok szerepe Tofeus Mihály zsoltármagyarázataiban 79-90. Gömöri György (Cambridge): Hunyadi János és Mátyás a 16—17. századi angol történetírásban 91-98. Koltay Klára: Perkins és Ames recepciója Magyarországon 1660-ig 99-114. Vadon Lehel: Az amerikai puritanizmus irodalma Magyarországon 115-124

The deal.II Library, Version 9.1

This paper provides an overview of the new features of the finite element library deal.II, version 9.1